Synteny key

Jump to Mouse chromosome 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, X.
Jump to Rat chromosome 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, X.

Sorted by order in Mouse

Jump to Mouse chromosome 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, X.

Mouse chromosome 1, length 195869683
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
1	1	3,007,338	18,247,777	15,240,440	+	5	96,085	16,719,803	16,623,719	-
2	1	18,396,790	46,461,832	28,065,043	+	9	16,972,122	45,065,680	28,093,559	+
3	1	47,185,626	53,937,098	6,751,473	+	9	45,086,756	52,405,566	7,318,811	-
4	1	54,071,043	97,299,322	43,228,280	+	9	52,335,683	96,815,009	44,479,327	+
5	1	97,721,476	98,748,265	1,026,790	+	9	96,515,409	97,556,581	1,041,173	-
6	1	98,763,935	100,893,552	2,129,618	+	13	990,813	3,879,478	2,888,666	-
7	1	99,493,959	99,856,550	362,592	+	13	22,254,123	22,684,471	430,349	+
8	1	100,476,082	102,823,060	2,346,979	+	13	20,313,022	23,739,709	3,426,688	+
9	1	103,030,918	112,651,711	9,620,794	+	13	7,533,612	19,814,686	12,281,075	+
10	1	112,877,314	115,806,288	2,928,975	+	13	24,547,489	28,331,346	3,783,858	+
11	1	114,159,933	114,691,505	531,573	+	13	3,670,416	4,217,202	546,787	-
12	1	114,681,887	115,223,061	541,175	+	13	6,847,191	7,199,852	352,662	+
13	1	115,922,043	116,781,612	859,570	+	13	28,521,660	29,570,753	1,049,094	+
14	1	117,252,196	117,706,811	454,616	+	13	24,161,765	24,702,538	540,774	+
15	1	118,467,570	195,763,681	77,296,112	+	13	30,914,054	111,342,068	80,428,015	+

Mouse chromosome 2, length 181423755
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
16	2	3,035,604	11,793,412	8,757,809	+	17	77,924,097	86,311,610	8,387,514	-
17	2	11,990,830	23,509,138	11,518,309	+	17	86,335,878	96,910,292	10,574,415	+
18	2	23,562,295	181,288,139	157,725,845	+	3	1,168,705	170,928,400	169,759,696	+

Mouse chromosome 3, length 160674399
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
19	3	3,367,803	15,335,319	11,967,517	+	2	87,637,141	100,588,255	12,951,115	-
20	3	15,821,907	27,470,914	11,649,008	+	2	100,669,196	113,537,791	12,868,596	+
21	3	27,608,057	28,647,783	1,039,727	+	2	115,066,058	116,158,141	1,092,084	+
22	3	28,770,856	29,953,922	1,183,067	+	2	113,631,876	114,965,842	1,333,967	+
23	3	30,013,785	31,427,288	1,413,504	+	2	116,176,022	117,603,485	1,427,464	-
24	3	31,448,109	160,668,701	129,220,593	+	2	117,799,589	258,140,531	140,340,943	+

Mouse chromosome 4, length 152921959
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
25	4	3,000,062	130,240,041	127,239,980	+	5	16,796,935	151,158,652	134,361,718	+
26	4	130,619,965	131,921,317	1,301,353	+	5	151,284,662	152,666,689	1,382,028	-
27	4	132,031,518	152,920,873	20,889,356	+	5	152,729,303	173,100,497	20,371,195	+

Mouse chromosome 5, length 149719773
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
28	5	3,001,619	4,835,233	1,833,615	+	4	19,377,235	21,473,001	2,095,767	+
29	5	4,849,270	5,426,911	577,642	+	4	21,489,175	22,081,559	592,385	-
30	5	5,845,657	10,672,517	4,826,861	+	4	22,630,589	27,784,161	5,153,573	+
31	5	10,751,479	15,978,080	5,226,602	+	4	13,448,718	19,295,844	5,847,127	-
32	5	16,063,075	28,240,133	12,177,059	+	4	456,812	12,880,644	12,423,833	-
33	5	28,358,490	30,716,225	2,357,736	+	6	24,069,270	26,196,097	2,126,828	-
34	5	30,992,120	59,646,362	28,654,243	+	14	53,546,155	83,743,623	30,197,469	-
35	5	59,649,313	60,112,473	463,161	+	4	12,895,251	13,441,279	546,029	+
36	5	60,128,159	105,983,800	45,855,642	+	14	1,477,589	53,043,745	51,566,157	-
37	5	107,214,600	109,087,670	1,873,071	+	12	44,480,873	46,596,497	2,115,625	-
38	5	109,390,041	109,808,751	418,711	+	19	14,257,063	14,673,251	416,189	+
39	5	110,203,067	129,515,272	19,312,206	+	12	25,379,490	44,430,872	19,051,383	-
40	5	129,674,453	130,182,288	507,836	+	12	24,928,404	25,329,489	401,086	+
41	5	130,309,018	134,421,780	4,112,763	+	12	20,969,514	24,877,895	3,908,382	-
42	5	135,030,803	135,379,852	349,050	+	12	19,519,542	19,865,674	346,133	+
43	5	135,472,696	135,914,917	442,222	+	12	17,158,009	17,952,098	794,090	+
44	5	136,161,280	149,719,544	13,558,265	+	12	3,213,119	16,579,356	13,366,238	-

Mouse chromosome 6, length 149950539
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
45	6	3,034,659	57,052,562	54,017,904	+	4	27,976,661	86,303,678	58,327,018	+
46	6	57,662,124	58,023,337	361,214	+	4	87,358,308	87,662,501	304,194	-
47	6	58,815,276	149,945,920	91,130,645	+	4	87,697,783	187,320,353	99,622,571	+

Mouse chromosome 7, length 134401573
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
48	7	3,305,127	6,535,283	3,230,157	+	1	65,057,736	69,921,674	4,863,939	-
49	7	6,903,612	7,248,468	344,857	+	1	63,087,113	63,314,954	227,842	+
50	7	7,351,396	7,891,431	540,036	+	7	15,411,516	15,803,006	391,491	+
51	7	8,230,104	40,787,776	32,557,673	+	1	72,402,200	101,992,398	29,590,199	+
52	7	40,894,677	41,366,604	471,928	+	1	102,222,608	102,682,949	460,342	-
53	7	41,513,481	64,312,319	22,798,839	+	1	103,814,483	131,800,077	27,985,595	+
54	7	64,317,291	64,629,901	312,611	+	1	131,825,614	132,107,464	281,851	-
55	7	65,025,816	134,401,570	69,375,755	+	1	132,406,515	205,937,981	73,531,467	+

Mouse chromosome 8, length 128923138
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
56	8	3,050,161	4,492,299	1,442,139	+	12	1,254,123	3,091,667	1,837,545	-
57	8	4,739,194	41,578,091	36,838,898	+	16	52,989,814	90,214,429	37,224,616	-
58	8	41,581,860	41,924,450	342,591	+	16	52,656,381	52,968,090	311,710	+
59	8	41,952,324	70,053,026	28,100,703	+	16	18,932,733	52,640,270	33,707,538	-
60	8	70,062,112	70,779,564	717,453	+	16	18,384,945	18,927,614	542,670	+
61	8	70,788,863	71,767,717	978,855	+	16	17,666,893	18,454,914	788,022	-
62	8	71,875,836	74,384,528	2,508,693	+	19	12,042,761	14,150,296	2,107,536	+
63	8	74,357,374	92,752,346	18,394,973	+	19	14,851,174	34,841,979	19,990,806	-
64	8	92,762,314	104,218,441	11,456,128	+	19	64,220	12,005,953	11,941,734	-
65	8	104,481,082	128,826,455	24,345,374	+	19	34,919,500	59,212,218	24,292,719	+

Mouse chromosome 9, length 124467299
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
66	9	3,557,440	121,942,078	118,384,639	+	8	12,028	126,688,160	126,676,133	+
67	9	122,044,764	122,391,120	346,357	+	8	126,858,558	127,201,766	343,209	-
68	9	122,806,172	124,453,394	1,647,223	+	8	127,253,418	128,959,914	1,706,497	+

Mouse chromosome 10, length 130738012
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
69	10	3,157,236	7,181,098	4,023,863	+	1	33,890,677	38,071,992	4,181,316	+
70	10	7,258,733	21,139,621	13,880,889	+	1	2,254,179	16,779,317	14,525,139	+
71	10	21,148,372	28,828,681	7,680,310	+	1	16,860,882	24,130,476	7,269,595	-
72	10	28,678,992	33,414,501	4,735,510	+	1	24,198,687	29,636,318	5,437,632	-
73	10	33,966,102	51,219,263	17,253,162	+	20	38,615,789	55,296,608	16,680,820	+
74	10	51,517,921	57,819,436	6,301,516	+	20	30,208,534	36,880,855	6,672,322	+
75	10	57,892,546	58,320,653	428,108	+	20	37,092,786	37,525,413	432,628	-
76	10	59,455,422	62,461,620	3,006,199	+	20	27,143,606	30,053,661	2,910,056	+
77	10	62,465,470	64,173,156	1,707,687	+	20	25,130,677	26,997,294	1,866,618	+
78	10	64,224,982	78,286,354	14,061,373	+	20	10,500,971	25,055,699	14,554,729	-
79	10	78,302,623	81,629,784	3,327,162	+	7	9,422,186	12,712,112	3,289,927	-
80	10	82,205,667	86,022,940	3,817,274	+	7	19,534,547	23,346,562	3,812,016	-
81	10	86,156,486	128,011,597	41,855,112	+	7	23,348,593	67,967,949	44,619,357	+
82	10	127,997,467	130,559,760	2,562,294	+	7	1,072,023	8,606,912	7,534,890	+

Mouse chromosome 11, length 122862689
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
83	11	3,044,684	31,268,240	28,223,557	+	14	83,788,086	112,204,031	28,415,946	+
84	11	31,512,052	32,464,077	952,026	+	10	15,583,891	16,537,638	953,748	-
85	11	32,466,366	66,376,824	33,910,459	+	10	17,131,001	52,054,012	34,923,012	+
86	11	66,403,028	66,707,759	304,732	+	10	52,179,635	52,626,806	447,172	-
87	11	66,711,572	77,030,061	10,318,490	+	10	52,716,977	63,614,792	10,897,816	+
88	11	77,032,356	78,396,850	1,364,495	+	10	66,500,255	67,941,214	1,440,960	-
89	11	78,433,248	80,742,134	2,308,887	+	10	63,701,090	66,174,659	2,473,570	+
90	11	80,851,032	122,379,088	41,528,057	+	10	68,281,441	110,733,342	42,451,902	+

Mouse chromosome 12, length 114462600
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
91	12	3,126,620	57,842,509	54,715,890	+	6	26,253,431	84,598,676	58,345,246	+
92	12	57,856,748	58,263,366	406,619	+	6	84,602,865	85,104,694	501,830	-
93	12	58,263,405	114,462,111	56,198,707	+	6	85,116,535	147,634,269	62,517,735	+

Mouse chromosome 13, length 116242670
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
94	13	3,292,358	13,229,293	9,936,936	+	17	66,544,929	77,896,471	11,351,543	-
95	13	13,368,421	63,456,309	50,087,889	+	17	5,503,959	59,590,644	54,086,686	-
96	13	63,905,507	64,558,706	653,200	+	17	5,125,442	5,400,737	275,296	+
97	13	64,773,633	69,606,105	4,832,473	+	17	180	5,117,546	5,117,367	-
98	13	69,683,710	70,621,946	938,237	+	1	29,695,248	30,644,991	949,744	-
99	13	70,867,977	80,443,598	9,575,622	+	2	1,452,802	12,749,635	11,296,834	+
100	13	80,468,951	80,963,496	494,546	+	2	12,785,545	13,489,640	704,096	-
101	13	80,970,470	111,040,872	30,070,403	+	2	13,506,392	45,777,025	32,270,634	+
102	13	111,042,365	111,799,895	757,531	+	2	46,309,496	47,138,774	829,279	+
103	13	111,800,095	112,245,463	445,369	+	2	45,794,141	46,303,256	509,116	+
104	13	112,254,913	116,242,430	3,987,518	+	2	47,139,691	51,594,005	4,454,315	+

Mouse chromosome 14, length 115844145
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
105	14	3,003,068	19,245,412	16,242,345	+	15	52,582	19,203,386	19,150,805	-
106	14	19,440,288	35,917,257	16,476,970	+	16	13,898	17,611,258	17,597,361	+
107	14	36,339,224	115,785,837	79,446,614	+	15	20,906,000	109,763,206	88,857,207	+

Mouse chromosome 15, length 104111694
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
108	15	3,000,380	32,730,425	29,730,046	+	2	52,250,450	85,176,208	32,925,759	+
109	15	32,730,938	104,078,601	71,347,664	+	7	68,210,458	142,609,020	74,398,563	+

Mouse chromosome 16, length 98986639
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
110	16	3,081,856	13,943,989	10,862,134	+	10	264,326	12,091,700	11,827,375	-
111	16	14,468,299	62,020,002	47,551,704	+	11	39,551,436	87,788,780	48,237,345	-
112	16	62,021,683	62,377,351	355,669	+	11	39,120,480	39,550,388	429,909	+
113	16	62,712,998	63,026,077	313,080	+	11	38,363,307	38,649,165	285,859	+
114	16	63,384,165	90,243,131	26,858,967	+	11	11,370	29,460,368	29,448,999	+
115	16	90,250,055	91,112,601	862,547	+	11	29,489,279	30,377,533	888,255	-
116	16	91,125,871	98,973,902	7,848,032	+	11	30,513,311	38,053,510	7,540,200	+

Mouse chromosome 17, length 93529596
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
117	17	3,560,772	6,092,220	2,531,449	+	1	38,103,846	40,716,532	2,612,687	-
118	17	6,260,459	6,708,523	448,065	+	1	41,361,424	41,825,931	464,508	-
119	17	7,258,170	12,188,031	4,929,862	+	1	41,865,719	47,205,882	5,340,164	-
120	17	12,737,870	16,568,007	3,830,138	+	1	53,080,969	56,957,018	3,876,050	+
121	17	18,654,732	19,147,409	492,678	+	1	49,207,272	49,642,538	435,267	-
122	17	19,181,044	19,890,188	709,145	+	1	58,397,210	59,030,419	633,210	+
123	17	22,223,696	24,975,725	2,752,030	+	10	12,794,098	15,555,746	2,761,649	+
124	17	25,012,740	25,594,514	581,775	+	10	16,548,318	17,130,709	582,392	-
125	17	25,614,285	30,807,588	5,193,304	+	20	5,154,458	10,520,001	5,365,544	+
126	17	30,842,135	31,871,721	1,029,587	+	7	12,701,578	13,919,413	1,217,836	+
127	17	32,020,616	32,451,738	431,123	+	7	15,942,139	16,427,710	485,572	+
128	17	32,504,226	36,965,196	4,460,971	+	20	114,004	5,131,591	5,017,588	-
129	17	38,893,934	52,729,032	13,835,099	+	9	13,390	16,360,389	16,347,000	-
130	17	56,278,065	57,274,672	996,608	+	13	3,898,167	5,271,896	1,373,730	-
131	17	57,278,546	70,067,187	12,788,642	+	9	97,590,372	110,979,358	13,388,987	+
132	17	70,067,682	75,821,214	5,753,533	+	6	17,861,400	24,063,973	6,202,574	-
133	17	75,927,392	91,463,770	15,536,379	+	6	5,572	17,758,258	17,752,687	+
134	17	92,028,776	93,528,415	1,499,640	+	9	111,039,889	112,764,695	1,724,807	-

Mouse chromosome 18, length 91041441
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
135	18	3,213,790	6,358,011	3,144,222	+	17	59,640,911	62,870,679	3,229,769	-
136	18	6,394,801	9,450,759	3,055,959	+	17	63,041,104	66,192,402	3,151,299	+
137	18	9,603,608	66,316,515	56,712,908	+	18	908,899	62,269,681	61,360,783	+
138	18	66,338,983	66,696,006	357,024	+	18	62,297,396	62,659,490	362,095	-
139	18	66,700,325	68,341,198	1,640,874	+	18	62,792,911	64,558,927	1,766,017	+
140	18	68,424,477	68,891,421	466,945	+	18	64,613,228	65,091,597	478,370	-
141	18	68,979,967	90,693,403	21,713,437	+	18	65,149,218	87,255,053	22,105,836	+

Mouse chromosome 19, length 61093376
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
142	19	3,000,006	3,897,646	897,641	+	1	209,647,521	210,624,756	977,236	+
143	19	3,984,767	7,431,431	3,446,665	+	1	205,944,422	209,645,502	3,701,081	-
144	19	7,603,844	41,184,825	33,580,982	+	1	211,281,047	247,102,391	35,821,345	+
145	19	41,595,070	43,409,592	1,814,523	+	1	247,153,415	249,100,383	1,946,969	-
146	19	43,606,407	44,076,576	470,170	+	1	249,279,633	249,515,347	235,715	-
147	19	43,896,422	60,901,071	17,004,650	+	1	249,568,750	267,928,529	18,359,780	+

Mouse chromosome X, length 149996094
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
148	X	3,000,959	4,479,942	1,478,984	+	X	26,172,454	27,842,493	1,670,040	-
149	X	5,371,427	6,388,091	1,016,665	+	X	28,503,514	29,480,758	977,245	+
150	X	6,851,000	18,766,788	11,915,789	+	X	12,509,236	26,222,178	13,712,943	-
151	X	19,355,889	20,010,564	654,676	+	X	11,886,490	12,441,666	555,177	+
152	X	20,035,668	31,242,035	11,206,368	+	X	0	11,680,997	11,680,998	-
153	X	31,438,713	59,095,932	27,657,220	+	X	131,158,270	160,611,835	29,453,566	+
154	X	59,794,821	60,240,893	446,073	+	X	29,894,794	30,269,562	374,769	+
155	X	61,291,309	96,422,742	35,131,434	+	X	62,647,687	99,847,372	37,199,686	+
156	X	96,495,314	108,488,713	11,993,400	+	X	99,849,180	112,864,622	13,015,443	-
157	X	108,549,560	122,791,207	14,241,648	+	X	113,546,308	128,880,268	15,333,961	+
158	X	122,946,952	129,948,562	7,001,611	+	X	30,094,393	37,537,622	7,443,230	-
159	X	130,429,368	132,705,479	2,276,112	+	X	39,852,528	42,578,617	2,726,090	+
160	X	132,789,959	133,783,916	993,958	+	X	37,600,991	38,826,190	1,225,200	-
161	X	134,176,745	134,613,653	436,909	+	X	43,951,926	44,207,368	255,443	+
162	X	134,938,630	149,994,369	15,055,740	+	X	44,803,667	61,751,970	16,948,304	-

Sorted by order in Rat

Jump to Rat chromosome 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, X.

Rat chromosome 1, length 268121971
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
70	10	7,258,733	21,139,621	13,880,889	+	1	2,254,179	16,779,317	14,525,139	+
71	10	21,148,372	28,828,681	7,680,310	+	1	16,860,882	24,130,476	7,269,595	-
72	10	28,678,992	33,414,501	4,735,510	+	1	24,198,687	29,636,318	5,437,632	-
98	13	69,683,710	70,621,946	938,237	+	1	29,695,248	30,644,991	949,744	-
69	10	3,157,236	7,181,098	4,023,863	+	1	33,890,677	38,071,992	4,181,316	+
117	17	3,560,772	6,092,220	2,531,449	+	1	38,103,846	40,716,532	2,612,687	-
118	17	6,260,459	6,708,523	448,065	+	1	41,361,424	41,825,931	464,508	-
119	17	7,258,170	12,188,031	4,929,862	+	1	41,865,719	47,205,882	5,340,164	-
121	17	18,654,732	19,147,409	492,678	+	1	49,207,272	49,642,538	435,267	-
120	17	12,737,870	16,568,007	3,830,138	+	1	53,080,969	56,957,018	3,876,050	+
122	17	19,181,044	19,890,188	709,145	+	1	58,397,210	59,030,419	633,210	+
49	7	6,903,612	7,248,468	344,857	+	1	63,087,113	63,314,954	227,842	+
48	7	3,305,127	6,535,283	3,230,157	+	1	65,057,736	69,921,674	4,863,939	-
51	7	8,230,104	40,787,776	32,557,673	+	1	72,402,200	101,992,398	29,590,199	+
52	7	40,894,677	41,366,604	471,928	+	1	102,222,608	102,682,949	460,342	-
53	7	41,513,481	64,312,319	22,798,839	+	1	103,814,483	131,800,077	27,985,595	+
54	7	64,317,291	64,629,901	312,611	+	1	131,825,614	132,107,464	281,851	-
55	7	65,025,816	134,401,570	69,375,755	+	1	132,406,515	205,937,981	73,531,467	+
143	19	3,984,767	7,431,431	3,446,665	+	1	205,944,422	209,645,502	3,701,081	-
142	19	3,000,006	3,897,646	897,641	+	1	209,647,521	210,624,756	977,236	+
144	19	7,603,844	41,184,825	33,580,982	+	1	211,281,047	247,102,391	35,821,345	+
145	19	41,595,070	43,409,592	1,814,523	+	1	247,153,415	249,100,383	1,946,969	-
146	19	43,606,407	44,076,576	470,170	+	1	249,279,633	249,515,347	235,715	-
147	19	43,896,422	60,901,071	17,004,650	+	1	249,568,750	267,928,529	18,359,780	+

Rat chromosome 2, length 258222147
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
99	13	70,867,977	80,443,598	9,575,622	+	2	1,452,802	12,749,635	11,296,834	+
100	13	80,468,951	80,963,496	494,546	+	2	12,785,545	13,489,640	704,096	-
101	13	80,970,470	111,040,872	30,070,403	+	2	13,506,392	45,777,025	32,270,634	+
103	13	111,800,095	112,245,463	445,369	+	2	45,794,141	46,303,256	509,116	+
102	13	111,042,365	111,799,895	757,531	+	2	46,309,496	47,138,774	829,279	+
104	13	112,254,913	116,242,430	3,987,518	+	2	47,139,691	51,594,005	4,454,315	+
108	15	3,000,380	32,730,425	29,730,046	+	2	52,250,450	85,176,208	32,925,759	+
19	3	3,367,803	15,335,319	11,967,517	+	2	87,637,141	100,588,255	12,951,115	-
20	3	15,821,907	27,470,914	11,649,008	+	2	100,669,196	113,537,791	12,868,596	+
22	3	28,770,856	29,953,922	1,183,067	+	2	113,631,876	114,965,842	1,333,967	+
21	3	27,608,057	28,647,783	1,039,727	+	2	115,066,058	116,158,141	1,092,084	+
23	3	30,013,785	31,427,288	1,413,504	+	2	116,176,022	117,603,485	1,427,464	-
24	3	31,448,109	160,668,701	129,220,593	+	2	117,799,589	258,140,531	140,340,943	+

Rat chromosome 3, length 170969371
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
18	2	23,562,295	181,288,139	157,725,845	+	3	1,168,705	170,928,400	169,759,696	+

Rat chromosome 4, length 187371129
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
32	5	16,063,075	28,240,133	12,177,059	+	4	456,812	12,880,644	12,423,833	-
35	5	59,649,313	60,112,473	463,161	+	4	12,895,251	13,441,279	546,029	+
31	5	10,751,479	15,978,080	5,226,602	+	4	13,448,718	19,295,844	5,847,127	-
28	5	3,001,619	4,835,233	1,833,615	+	4	19,377,235	21,473,001	2,095,767	+
29	5	4,849,270	5,426,911	577,642	+	4	21,489,175	22,081,559	592,385	-
30	5	5,845,657	10,672,517	4,826,861	+	4	22,630,589	27,784,161	5,153,573	+
45	6	3,034,659	57,052,562	54,017,904	+	4	27,976,661	86,303,678	58,327,018	+
46	6	57,662,124	58,023,337	361,214	+	4	87,358,308	87,662,501	304,194	-
47	6	58,815,276	149,945,920	91,130,645	+	4	87,697,783	187,320,353	99,622,571	+

Rat chromosome 5, length 173106704
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
1	1	3,007,338	18,247,777	15,240,440	+	5	96,085	16,719,803	16,623,719	-
25	4	3,000,062	130,240,041	127,239,980	+	5	16,796,935	151,158,652	134,361,718	+
26	4	130,619,965	131,921,317	1,301,353	+	5	151,284,662	152,666,689	1,382,028	-
27	4	132,031,518	152,920,873	20,889,356	+	5	152,729,303	173,100,497	20,371,195	+

Rat chromosome 6, length 147642806
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
133	17	75,927,392	91,463,770	15,536,379	+	6	5,572	17,758,258	17,752,687	+
132	17	70,067,682	75,821,214	5,753,533	+	6	17,861,400	24,063,973	6,202,574	-
33	5	28,358,490	30,716,225	2,357,736	+	6	24,069,270	26,196,097	2,126,828	-
91	12	3,126,620	57,842,509	54,715,890	+	6	26,253,431	84,598,676	58,345,246	+
92	12	57,856,748	58,263,366	406,619	+	6	84,602,865	85,104,694	501,830	-
93	12	58,263,405	114,462,111	56,198,707	+	6	85,116,535	147,634,269	62,517,735	+

Rat chromosome 7, length 143082968
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
82	10	127,997,467	130,559,760	2,562,294	+	7	1,072,023	8,606,912	7,534,890	+
79	10	78,302,623	81,629,784	3,327,162	+	7	9,422,186	12,712,112	3,289,927	-
126	17	30,842,135	31,871,721	1,029,587	+	7	12,701,578	13,919,413	1,217,836	+
50	7	7,351,396	7,891,431	540,036	+	7	15,411,516	15,803,006	391,491	+
127	17	32,020,616	32,451,738	431,123	+	7	15,942,139	16,427,710	485,572	+
80	10	82,205,667	86,022,940	3,817,274	+	7	19,534,547	23,346,562	3,812,016	-
81	10	86,156,486	128,011,597	41,855,112	+	7	23,348,593	67,967,949	44,619,357	+
109	15	32,730,938	104,078,601	71,347,664	+	7	68,210,458	142,609,020	74,398,563	+

Rat chromosome 8, length 129061546
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
66	9	3,557,440	121,942,078	118,384,639	+	8	12,028	126,688,160	126,676,133	+
67	9	122,044,764	122,391,120	346,357	+	8	126,858,558	127,201,766	343,209	-
68	9	122,806,172	124,453,394	1,647,223	+	8	127,253,418	128,959,914	1,706,497	+

Rat chromosome 9, length 113649943
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
129	17	38,893,934	52,729,032	13,835,099	+	9	13,390	16,360,389	16,347,000	-
2	1	18,396,790	46,461,832	28,065,043	+	9	16,972,122	45,065,680	28,093,559	+
3	1	47,185,626	53,937,098	6,751,473	+	9	45,086,756	52,405,566	7,318,811	-
4	1	54,071,043	97,299,322	43,228,280	+	9	52,335,683	96,815,009	44,479,327	+
5	1	97,721,476	98,748,265	1,026,790	+	9	96,515,409	97,556,581	1,041,173	-
131	17	57,278,546	70,067,187	12,788,642	+	9	97,590,372	110,979,358	13,388,987	+
134	17	92,028,776	93,528,415	1,499,640	+	9	111,039,889	112,764,695	1,724,807	-

Rat chromosome 10, length 110733352
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
110	16	3,081,856	13,943,989	10,862,134	+	10	264,326	12,091,700	11,827,375	-
123	17	22,223,696	24,975,725	2,752,030	+	10	12,794,098	15,555,746	2,761,649	+
84	11	31,512,052	32,464,077	952,026	+	10	15,583,891	16,537,638	953,748	-
124	17	25,012,740	25,594,514	581,775	+	10	16,548,318	17,130,709	582,392	-
85	11	32,466,366	66,376,824	33,910,459	+	10	17,131,001	52,054,012	34,923,012	+
86	11	66,403,028	66,707,759	304,732	+	10	52,179,635	52,626,806	447,172	-
87	11	66,711,572	77,030,061	10,318,490	+	10	52,716,977	63,614,792	10,897,816	+
89	11	78,433,248	80,742,134	2,308,887	+	10	63,701,090	66,174,659	2,473,570	+
88	11	77,032,356	78,396,850	1,364,495	+	10	66,500,255	67,941,214	1,440,960	-
90	11	80,851,032	122,379,088	41,528,057	+	10	68,281,441	110,733,342	42,451,902	+

Rat chromosome 11, length 87800381
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
114	16	63,384,165	90,243,131	26,858,967	+	11	11,370	29,460,368	29,448,999	+
115	16	90,250,055	91,112,601	862,547	+	11	29,489,279	30,377,533	888,255	-
116	16	91,125,871	98,973,902	7,848,032	+	11	30,513,311	38,053,510	7,540,200	+
113	16	62,712,998	63,026,077	313,080	+	11	38,363,307	38,649,165	285,859	+
112	16	62,021,683	62,377,351	355,669	+	11	39,120,480	39,550,388	429,909	+
111	16	14,468,299	62,020,002	47,551,704	+	11	39,551,436	87,788,780	48,237,345	-

Rat chromosome 12, length 46649226
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
56	8	3,050,161	4,492,299	1,442,139	+	12	1,254,123	3,091,667	1,837,545	-
44	5	136,161,280	149,719,544	13,558,265	+	12	3,213,119	16,579,356	13,366,238	-
43	5	135,472,696	135,914,917	442,222	+	12	17,158,009	17,952,098	794,090	+
42	5	135,030,803	135,379,852	349,050	+	12	19,519,542	19,865,674	346,133	+
41	5	130,309,018	134,421,780	4,112,763	+	12	20,969,514	24,877,895	3,908,382	-
40	5	129,674,453	130,182,288	507,836	+	12	24,928,404	25,329,489	401,086	+
39	5	110,203,067	129,515,272	19,312,206	+	12	25,379,490	44,430,872	19,051,383	-
37	5	107,214,600	109,087,670	1,873,071	+	12	44,480,873	46,596,497	2,115,625	-

Rat chromosome 13, length 111348958
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
6	1	98,763,935	100,893,552	2,129,618	+	13	990,813	3,879,478	2,888,666	-
11	1	114,159,933	114,691,505	531,573	+	13	3,670,416	4,217,202	546,787	-
130	17	56,278,065	57,274,672	996,608	+	13	3,898,167	5,271,896	1,373,730	-
12	1	114,681,887	115,223,061	541,175	+	13	6,847,191	7,199,852	352,662	+
9	1	103,030,918	112,651,711	9,620,794	+	13	7,533,612	19,814,686	12,281,075	+
8	1	100,476,082	102,823,060	2,346,979	+	13	20,313,022	23,739,709	3,426,688	+
7	1	99,493,959	99,856,550	362,592	+	13	22,254,123	22,684,471	430,349	+
14	1	117,252,196	117,706,811	454,616	+	13	24,161,765	24,702,538	540,774	+
10	1	112,877,314	115,806,288	2,928,975	+	13	24,547,489	28,331,346	3,783,858	+
13	1	115,922,043	116,781,612	859,570	+	13	28,521,660	29,570,753	1,049,094	+
15	1	118,467,570	195,763,681	77,296,112	+	13	30,914,054	111,342,068	80,428,015	+

Rat chromosome 14, length 112220682
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
36	5	60,128,159	105,983,800	45,855,642	+	14	1,477,589	53,043,745	51,566,157	-
34	5	30,992,120	59,646,362	28,654,243	+	14	53,546,155	83,743,623	30,197,469	-
83	11	3,044,684	31,268,240	28,223,557	+	14	83,788,086	112,204,031	28,415,946	+

Rat chromosome 15, length 109774626
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
105	14	3,003,068	19,245,412	16,242,345	+	15	52,582	19,203,386	19,150,805	-
107	14	36,339,224	115,785,837	79,446,614	+	15	20,906,000	109,763,206	88,857,207	+

Rat chromosome 16, length 90224819
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
106	14	19,440,288	35,917,257	16,476,970	+	16	13,898	17,611,258	17,597,361	+
61	8	70,788,863	71,767,717	978,855	+	16	17,666,893	18,454,914	788,022	-
60	8	70,062,112	70,779,564	717,453	+	16	18,384,945	18,927,614	542,670	+
59	8	41,952,324	70,053,026	28,100,703	+	16	18,932,733	52,640,270	33,707,538	-
58	8	41,581,860	41,924,450	342,591	+	16	52,656,381	52,968,090	311,710	+
57	8	4,739,194	41,578,091	36,838,898	+	16	52,989,814	90,214,429	37,224,616	-

Rat chromosome 17, length 97307196
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
97	13	64,773,633	69,606,105	4,832,473	+	17	180	5,117,546	5,117,367	-
96	13	63,905,507	64,558,706	653,200	+	17	5,125,442	5,400,737	275,296	+
95	13	13,368,421	63,456,309	50,087,889	+	17	5,503,959	59,590,644	54,086,686	-
135	18	3,213,790	6,358,011	3,144,222	+	17	59,640,911	62,870,679	3,229,769	-
136	18	6,394,801	9,450,759	3,055,959	+	17	63,041,104	66,192,402	3,151,299	+
94	13	3,292,358	13,229,293	9,936,936	+	17	66,544,929	77,896,471	11,351,543	-
16	2	3,035,604	11,793,412	8,757,809	+	17	77,924,097	86,311,610	8,387,514	-
17	2	11,990,830	23,509,138	11,518,309	+	17	86,335,878	96,910,292	10,574,415	+

Rat chromosome 18, length 87338544
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
137	18	9,603,608	66,316,515	56,712,908	+	18	908,899	62,269,681	61,360,783	+
138	18	66,338,983	66,696,006	357,024	+	18	62,297,396	62,659,490	362,095	-
139	18	66,700,325	68,341,198	1,640,874	+	18	62,792,911	64,558,927	1,766,017	+
140	18	68,424,477	68,891,421	466,945	+	18	64,613,228	65,091,597	478,370	-
141	18	68,979,967	90,693,403	21,713,437	+	18	65,149,218	87,255,053	22,105,836	+

Rat chromosome 19, length 59223525
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
64	8	92,762,314	104,218,441	11,456,128	+	19	64,220	12,005,953	11,941,734	-
62	8	71,875,836	74,384,528	2,508,693	+	19	12,042,761	14,150,296	2,107,536	+
38	5	109,390,041	109,808,751	418,711	+	19	14,257,063	14,673,251	416,189	+
63	8	74,357,374	92,752,346	18,394,973	+	19	14,851,174	34,841,979	19,990,806	-
65	8	104,481,082	128,826,455	24,345,374	+	19	34,919,500	59,212,218	24,292,719	+

Rat chromosome 20, length 55296979
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
128	17	32,504,226	36,965,196	4,460,971	+	20	114,004	5,131,591	5,017,588	-
125	17	25,614,285	30,807,588	5,193,304	+	20	5,154,458	10,520,001	5,365,544	+
78	10	64,224,982	78,286,354	14,061,373	+	20	10,500,971	25,055,699	14,554,729	-
77	10	62,465,470	64,173,156	1,707,687	+	20	25,130,677	26,997,294	1,866,618	+
76	10	59,455,422	62,461,620	3,006,199	+	20	27,143,606	30,053,661	2,910,056	+
74	10	51,517,921	57,819,436	6,301,516	+	20	30,208,534	36,880,855	6,672,322	+
75	10	57,892,546	58,320,653	428,108	+	20	37,092,786	37,525,413	432,628	-
73	10	33,966,102	51,219,263	17,253,162	+	20	38,615,789	55,296,608	16,680,820	+

Rat chromosome X, length 160775580
	Mouse					Rat
ID	chr	start	end	len	sign	chr	start	end	len	sign
152	X	20,035,668	31,242,035	11,206,368	+	X	0	11,680,997	11,680,998	-
151	X	19,355,889	20,010,564	654,676	+	X	11,886,490	12,441,666	555,177	+
150	X	6,851,000	18,766,788	11,915,789	+	X	12,509,236	26,222,178	13,712,943	-
148	X	3,000,959	4,479,942	1,478,984	+	X	26,172,454	27,842,493	1,670,040	-
149	X	5,371,427	6,388,091	1,016,665	+	X	28,503,514	29,480,758	977,245	+
154	X	59,794,821	60,240,893	446,073	+	X	29,894,794	30,269,562	374,769	+
158	X	122,946,952	129,948,562	7,001,611	+	X	30,094,393	37,537,622	7,443,230	-
160	X	132,789,959	133,783,916	993,958	+	X	37,600,991	38,826,190	1,225,200	-
159	X	130,429,368	132,705,479	2,276,112	+	X	39,852,528	42,578,617	2,726,090	+
161	X	134,176,745	134,613,653	436,909	+	X	43,951,926	44,207,368	255,443	+
162	X	134,938,630	149,994,369	15,055,740	+	X	44,803,667	61,751,970	16,948,304	-
155	X	61,291,309	96,422,742	35,131,434	+	X	62,647,687	99,847,372	37,199,686	+
156	X	96,495,314	108,488,713	11,993,400	+	X	99,849,180	112,864,622	13,015,443	-
157	X	108,549,560	122,791,207	14,241,648	+	X	113,546,308	128,880,268	15,333,961	+
153	X	31,438,713	59,095,932	27,657,220	+	X	131,158,270	160,611,835	29,453,566	+